I know it is counter intuitive, but raise the probe feed rate. A common tendency when starting out probing is to go as slow as possible out of fear of breaking something. Alas, I've found multiple times that probing too slow will get one frustrated. What happens is that contact bounce becomes a problem at slow speeds; the contact bounce results in multiple pulses into the mach probe input.
FYI, I typically run my probing operations at 40-50IPM and
IF I do the slower 2nd probe I run it at about 15-20ipm.
From experimentation I've learned that my probe gets flakey below about 12IPM; so I never probe slower than that. This threshold will vary from probe to probe and also depends a bit on the amount of electrical noise in the system, de-bounce settings etc.
Now then, notice the bold "if" above?
Here is a (semi)secret: You don't need the 2nd slow probe; it's not of much use

really.
I've written about this on the old support forum, but I've done enough probing tests to verify (at least to me) that the 2nd probe does not measurably increase the accuracy of the measurement. At least I've never been able to get data to show that it is worth the time it takes.
You're welcome to do your own tests - set up a fixed block, probe to it at different rates and record the trigger point. Do this multiple times for each probe feed rate so you get data to plot re probe repeatability vs feed rate. Do this a bunch more times at different rates for a single probe and again for an array of speeds for the 2nd probe. My test never showed the 2nd probe op as increasing the accuracy.
If you get different results re the value of the 2nd probe, I'd like to hear about it. So far in 3 years no one has offered up contradictory data.
That raises an obvious question: So why is there double probing in MSM if the extra probe doesn't help?
Answer: Because some folks
believe double probing has to be better. While I don't have any data to support that belief, I'm not in the business of arguing about this with folks. Customers wanted that feature and they told me that MSM would not be competitive without it and they would not buy MSM if it were not there. So MSM got the double probing feature built in early in MSM development and it's had the the 2nd probe feature ever since....
If you want single probing only, set the slow probe feed rate = 0. That disables the 2nd probe operation.
Dave